The Dynamics GP Reconcile reports only perform a very basic analysis. Data in GP is stored in multiple tables and the GP reports just don't dig deep enough into the data to confirm if there is an issue or not. These are the transactions that marked as Potentially Matched. These are more often than not false positives and send you a on wild goose chase. We use The Closer from Reporting-Central which is a much better tool. Their analysis is much deeper and they have error codes that classify what the underlying issue is, there are no "potentially matched" transactions with The Closer. We use it for ap and bank trxs as well. You should look into it!
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